A conditional U5 snRNA mutation affecting pre-mRNA splicing and nuclear pre-mRNA retention identifies SSD1/SRK1 as a general splicing mutant suppressor

Nucleic Acids Res. 1999 Sep 1;27(17):3455-65. doi: 10.1093/nar/27.17.3455.

Abstract

A combination of point mutations disrupting both stem 1 and stem 2 of U5 snRNA (U5AI) was found to confer a thermosensitive phenotype in vivo. In a strain expressing U5AI, pre-mRNA splicing was blocked before the first step through an inability of the mutant U5 snRNA to efficiently associate with the U4/U6 di-snRNP. Formation of early splicing complexes was not affected in extracts prepared from U5 snRNA mutant cells, while the capacity of these extracts to splice a pre-mRNA in vitro was greatly diminished. In addition, significant levels of a translation product derived from intron containing pre-mRNAs could be detected in vivo. The SSD1/SRK1 gene was identified as a multi-copy suppressor of the U5AI snRNA mutant. Single copy expression of SSD1/SRK1 was sufficient to suppress the thermosensitive phenotype, and high copy expression partially suppressed the splicing and U4/U6.U5 tri-snRNP assembly pheno-types. SSD1/SRK1 also suppressed thermosensitive mutations in the Prp18p and U1-70K proteins, while inhibiting growth of the cold sensitive U1-4U snRNA mutant at 30 degrees C. Thus we have identified SSD1/SRK1 as a general suppressor of splicing mutants.

MeSH terms

  • Base Sequence
  • Cell Nucleus / genetics
  • Cell Nucleus / metabolism*
  • Fungal Proteins / chemistry
  • Fungal Proteins / genetics
  • Genes, Suppressor / genetics*
  • Genes, Suppressor / physiology*
  • Molecular Sequence Data
  • Mutation*
  • Nucleic Acid Conformation
  • Phenotype
  • RNA Precursors / chemistry
  • RNA Precursors / genetics*
  • RNA Splicing*
  • RNA, Small Nuclear / chemistry
  • RNA, Small Nuclear / genetics*
  • Ribonucleoprotein, U4-U6 Small Nuclear / metabolism
  • Suppression, Genetic
  • Temperature

Substances

  • Fungal Proteins
  • RNA Precursors
  • RNA, Small Nuclear
  • Ribonucleoprotein, U4-U6 Small Nuclear