Change: Representation

created on Dec. 6, 2012, 11:56 p.m. by Hevok & updated on Jan. 12, 2013, 5:35 p.m. by Hevok

Denigma |d|

.. image:: http://dgallery.s3.amazonaws.com/denigma_pos.png :width: 500 :height: 250 :align: center

| www.denigma.de_

| Daniel Wuttke_ | Crowed-sourcing support | Data Unification, Integration, Analysis & Exchange

.. _Daniel Wuttke: http://denigma.de/experts/profile/Daniel_Wuttke

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Enigma |d|

• WW2: Encoding/Decoding information

.. image:: http://dgallery.s3.amazonaws.com/treasured_enigma_370px.jpg :width: 325 :height: 225 :align: center

• Each submarine equipped with an Enigma

• Enabled exchange of information

.. image:: http://dgallery.s3.amazonaws.com/U-995q.jpg :width: 325 :height: 225 :align: center

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Biological Information |d|

• Post-genomic era

• data increases rapidly

• but not fast enough

• computational and organizational challenges

• Genomic code

• everything is encoded in the genome

• also Aging

Can it be decoded?

.. image:: http://dgallery.s3.amazonaws.com/300px-DNA_information.png :width: 275 :height: 350 :align: center

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Decoding Ageing |d|

• Objective: Construction of a **Digital Decipher Machine** |e| |s|
• Rationality: Research + Programming + Design
• Implementation: Open Source & D\ ocument-\ D\ riven D\ evelopment
• Philosophy: Everything editable, modifiable & programmable
• Modularity: Built by apps and Data Units

.. |e| image:: http://dgallery.s3.amazonaws.com/enigma.jpg :width: 25

.. |s| image:: http://dgallery.s3.amazonaws.com/red_sphere.jpg :width: 25

.. _www.denigma.de: http://www.denigma.de

New Concepts_ |m|

.. image:: http://dgallery.s3.amazonaws.com/concepts.jpg :width: 250

.. |m| image:: http://dgallery.s3.amazonaws.com/modularity.jpg :width: 250

.. _concepts: http://denigma.de/data/entry/denigma-concepts

| "Denigma is as | strong as diamond, and |diamond| | as flexible as carbon fibre, but |carbon| | in its very heart its all in silicon" |silicon|

.. |diamond| image:: http://dgallery.s3.amazonaws.com/diamond.jpeg :width: 50

.. |carbon| image:: http://dgallery.s3.amazonaws.com/carbon-fiber.jpg :width: 50

.. |silicon| image:: http://dgallery.s3.amazonaws.com/silicon.jpg :width: 50

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Unity |d|

• A schema that fits everything -> Data Unit
• reStructuredText |u|
• Data Entries supports:
• ===== =========== ========== Tags_ Categories_ Hierarchy_ ===== =========== ========== |t| |c| |h|
  ===== =========== ==========

.. _tags: http://denigma.de/data/entry/data-tags

.. _categories: http://denigma.de/data/entry/data-categories

.. _hierarchy: http://denigma.de/data/entry/data-hierarchy

• ========= ================== Relations Graphs_ ========= ================== |r| |g| ========= ==================
• Next-gen Ontology Construction
• Denigma learns from what you teach it

.. _Graphs: http://denigma.de/data/entry/graph

.. |u| image:: http://dgallery.s3.amazonaws.com/data_unit.jpg :width: 250

.. |t| image:: http://dgallery.s3.amazonaws.com/tags.png :height: 100

.. |c| image:: http://dgallery.s3.amazonaws.com/categories.jpg :height: 100

.. |h| image:: http://dgallery.s3.amazonaws.com/hierarchy.jpg :height: 100

.. |r| image:: http://dgallery.s3.amazonaws.com/relations.jpg :height: 100

.. |g| image:: http://dgallery.s3.amazonaws.com/graph.png :height: 100

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Unify |d|

• Multiple databases - multi-strategy endeavour
• Information integration (DBs, Literature, Experts)
• Robust data unification protocol |intersection|

• Integrator sector: |integrator|

• Annotations | Interactions | Expressions | Datasets | Lifespan

• Deciphering algorithms on unified data

• Logical reasoning/inference

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Linking Researchers

• Communication platform for effective collaborations
• Data Units for rapid exchange of information
• Open Distributed Science

.. image:: http://dgallery.s3.amazonaws.com/ConnDots_Header.jpg :width: 500 :height: 200 :align: center

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Building A Denigma |d|

Contact: Hevok_ at Denigma |sphere|

.. |sphere| image:: http://dgallery.s3.amazonaws.com/red-glass-sphere.jpg :width: 250

.. |intersection| image:: http://dgallery.s3.amazonaws.com/logic-and-reasoning-skills.jpg :width: 250

.. |integrator| image:: http://dgallery.s3.amazonaws.com/integration.jpg :width: 250

.. |d| image:: http://dgallery.s3.amazonaws.com/favi.png :width: 25

.. _hevok: http://www.denigma.de/profiles/profile/hevok/

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See entry | Admin

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